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| Issue Date | Title | Author(s) |
| 2009 | Accurate microRNA target prediction correlates with protein repression levels | Maragkakis, Manolis; Alexiou, Panagiotis; Papadopoulos, Giorgio L.; Reczko, Martin; Dalamagas, Theodore; Giannopoulos, George; Goumas, George; Koukis, Evangelos; Kourtis, Kornilios; Simossis, Victor A.; Sethupathy, Praveen; Vergoulis, Thanasis; Koziris, Nectarios; Sellis, Timos; Tsanakas, Panagiotis; Hatzigeorgiou, Artemis G. |
| 2012 | Accurate microRNA target prediction using detailed binding site accessibility and machine learning on proteomics data | Reczko, Martin; Maragkakis, Manolis; Alexiou, Panagiotis; Papadopoulos, Giorgio L.; Hatzigeorgiou, Artemis G. |
| 2023 | Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation | Hejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis |
| 2023 | Beyond microRNAs : analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation | Hejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis |
| 2021 | Bioinformatics and machine learning approaches to understand the regulation of mobile genetic elements | Giassa, Ilektra-Chara; Alexiou, Panagiotis |
| 2023 | CATSNAP : a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing | Timofeyenko, Ksenia; Kanavalau, Dzmitry; Alexiou, Panagiotis; Kalyna, Maria; ůžč첹, |
| 2018 | cCLIP-seq : retrieval of chimeric reads from HITS-CLIP (CLIP-seq) libraries | Alexiou, Panagiotis; Maragkakis, Manolis; Mourelatos, Zissimos; Vourekas, Anastassios |
| 2020 | CDK9 activity is critical for maintaining MDM4 overexpression in tumor cells | ŠěٰDZá,ѴDzԾ첹; ҰǷɰDZá,ٱřԲ; í,ʱٰ; ղčíDZá,ǰ; ʲšDZá,ձDzԾ첹; Verlande, Amandine; Jorda, Radek; šٴǴ,ձ徱í; ,á; Alexiou, Panagiotis; dzٰ,ձ徱í; Uldrijan, Stjepan |
| 2016 | 䳢ʳմǴDZ—ԴDZǾԴڴǰپ䳢-Բܾٱ | Maragkakis, Manolis; Alexiou, Panagiotis; Nakaya, Tadashi; Mourelatos, Zissimos |
| 2023 | Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics | Martinek, Vlastimil; Martin, Jessica; Belair, Cedric; Payea, Matthew John; Malla, Sulochan; Alexiou, Panagiotis; Maragkakis, Manolis |
| 2024 | Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics | Martinek, Vlastimil; Martin, Jessica; Belair, Cedric; Payea, Matthew J.; Malla, Sulochan; Alexiou, Panagiotis; Maragkakis, Manolis |
| 2011 | Development of computational systems for the study of the expression and function of miRNAs | Alexiou, Panagiotis |
| 2009 | DIANA-microT web server : elucidating microRNA functions through target prediction | Maragkakis, Manolis; Reczko, Martin; Simossis, Victor A.; Alexiou, Panagiotis; Papadopoulos, Giorgos L.; Dalamagas, Theodore; Giannopoulos, Giorgos; Goumas, G.; Koukis, Evangelos; Kourtis, Kornilios; Vergoulis, Thanasis; Koziris, Nectarios; Sellis, Timoleon; Tsanakas, Panayotis; Hatzigeorgiou, Artemis G. |
| 2011 | DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association | Maragkakis, Manolis; Vergoulis, Thanasis; Alexiou, Panagiotis; Reczko, Martin; Plomaritou, Kyriaki; Gousis, Mixail; Kourtis, Kornilios; Koziris, Nectarios; Dalamagas, Theodore; Hatzigeorgiou, Artemis G. |
| 2010 | The DIANA-mirExTra web server : from gene expression data to microRNA function | Alexiou, Panagiotis; Maragkakis, Manolis; Papadopoulos, Giorgio L.; Simmosis, Victor A.; Zhang, Lin; Hatzigeorgiou, Artemis G. |
| 2021 | DIANA-miRGen v4 : indexing promoters and regulators for more than 1500 microRNAs | Perdikopanis, Nikos; Georgakilas, Georgios K.; Grigoriadis, Dimitris; Pierros, Vasilis; Kavakiotis, Ioannis; Alexiou, Panagiotis; Hatzigeorgiou, Artemis |
| 2009 | DIANA-mirPath : integrating human and mouse microRNAs in pathways | Papadopoulos, Giorgos L.; Alexiou, Panagiotis; Maragkakis, Manolis; Reczko, Martin; Hatzigeorgiou, Artemis G. |
| 2022 | ENNGene : an Easy Neural Network model building tool for Genomics | ܱDZá,š첹; ղܱí,Իř; ʴDZáč,ܲ; Jozefov, Filip; ѲٲԱ,մdzáš; Alexiou, Panagiotis |
| 2022 | Fine-tuning transformers for genomic tasks | Martinek, Vlastimil; Cechak, David; Gresova, Katarina; Alexiou, Panagiotis; Simecek, Petr |
| 2012 | Functional microRNA targets in protein coding sequences | Reczko, Martin; Maragkakis, Manolis; Alexiou, Panagiotis; Grosse, Ivo; Hatzigeorgiou, Artemis G. |