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RGV, RStudio and SSHFS

RGV, RStudio and SSHFS

Downloading and installing Integrative Genomics Viewer (IGV)

  1. Go to the .
  2. Click on Downloads and select the download package according to your OS:
For Windows OS:
  1. Download the Windows package and execute the self-extracting archive. Save to your preferred location.
  2. To run the software, open the extracted folder and double-click on the file 'igv.bat'

For Mac OS:
  1. Download and unzip the Mac App archive, then double-click the IGV application to run it
  2. The application can be moved to a folder of your choice.
For Linux OS:
  1. Download and unzip the binary distribution archive in your preferred folder.
  2. Launch IGV using the shell script 'igv.sh'

Downloading and installing RStudio

RStudio requires the R statistical package to be installed prior to use.

To install the latest version of R, follow the installation guidelines by following the links below:
For Windows OS: 
For Mac OS: 
For Linux OS: 

Once R has installed, download and install RStudio Desktop (free) for your operating system either using the download links from .

or

by using the following direct download links:




Downloading and installing SSHFS

Direct installation links:

For Windows OS:

Copy and paste the following link in the address bar:
 

For Mac OS (10.5 or later):

For Ubuntu/Debian OS: In the command line, enter the following: sudo apt-get install sshfs


/r/projects/trainmalta/trainingmaterial/downloadinstructions